Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs35326596 chr2:37253323 T/G 2.03E-5 366 20.45 14.9 8.73 KM Plot
LIHC rs35418987 chr14:56017407 T/G 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs35462840 chr16:1498270 A/G 3.57E-7 367 19.37 22 1.87 KM Plot
LIHC rs35466279 chr14:56017022 C/T 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs35536987 chr14:56024021 A/G 8.58E-9 366 18.87 27.45 1.13 KM Plot
LIHC rs35622893 chr2:37145392 C/T 1.41E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs35642648 chr3:7941213 G/A 1.87E-7 368 19.13 24.43 3.03 KM Plot
LIHC rs35830444 chr14:56017350 T/C 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs35926947 chr14:56018151 CAG/C 6.21E-9 368 18.93 26.63 1.13 KM Plot
LIHC rs36084967 chr3:7939555 C/T 1.87E-7 368 19.13 24.43 3.03 KM Plot
LIHC rs36120452 chr14:56028107 CAT/C 1.21E-8 359 18.83 27.45 1.13 KM Plot
LIHC rs362350 chr14:73631092 A/G 8.85E-6 368 20.6 13.17 1.13 KM Plot
LIHC rs362424 chr14:73569343 C/T 4.76E-6 366 20.27 13.3 4.93 KM Plot
LIHC rs369046218 chr2:37078626 AAAAAAAGAAAAG/A 1.75E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs369508587 chr2:37154458 CTGTGCAA/C 1.1E-5 366 20.45 12.17 8.73 KM Plot